IL_7S9U_013

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_013 not in the Motif Atlas

Homologous match to IL_4WF9_016

Geometric discrepancy: 0.157

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

7S9U|1|A|A|582
7S9U|1|A|G|583
7S9U|1|A|A|584
7S9U|1|A|G|585
*
7S9U|1|A|U|598
7S9U|1|A|G|599
7S9U|1|A|A|600
7S9U|1|A|U|601

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20