IL_7S9U_016

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_016 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.2095

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

7S9U|1|A|U|650
7S9U|1|A|U|651
7S9U|1|A|A|652
7S9U|1|A|A|653
7S9U|1|A|G|654
*
7S9U|1|A|C|664
7S9U|1|A|G|665
7S9U|1|A|G|666
7S9U|1|A|A|667
7S9U|1|A|G|668

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15