IL_7S9U_026

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CU*AUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_026 not in the Motif Atlas

Geometric match to IL_5VSU_003

Geometric discrepancy: 0.261

The information below is about IL_5VSU_003

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

7S9U|1|A|C|899
7S9U|1|A|U|900
*
7S9U|1|A|A|971
7S9U|1|A|U|972
7S9U|1|A|G|973

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain V

50S ribosomal protein L27

Chain Z

50S ribosomal protein L30