IL_7S9U_028

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCACUG*CAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_028 not in the Motif Atlas

Geometric match to IL_4V9F_035

Geometric discrepancy: 0.296

The information below is about IL_4V9F_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7S9U|1|A|G|911
7S9U|1|A|C|912
7S9U|1|A|A|913
7S9U|1|A|C|914
7S9U|1|A|U|915
7S9U|1|A|G|916
*
7S9U|1|A|C|955
7S9U|1|A|A|956
7S9U|1|A|A|957
7S9U|1|A|A|958
7S9U|1|A|C|959

Current chains

Chain A

RNA (2436-MER)

Nearby chains