IL_7S9U_074

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

7S9U|1|A|U|2718, 7S9U|1|A|A|2719

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_074 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.109

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

7S9U|1|A|U|2716
7S9U|1|A|G|2717
7S9U|1|A|U|2718
7S9U|1|A|A|2719
7S9U|1|A|C|2720
*
7S9U|1|A|G|2747
7S9U|1|A|G|2748
7S9U|1|A|U|2749
7S9U|1|A|A|2750
7S9U|1|A|G|2751

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19