IL_7S9U_087

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_087 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1383

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

7S9U|1|A|G|1711
7S9U|1|A|G|1712
7S9U|1|A|A|1713
7S9U|1|A|A|1714
7S9U|1|A|C|1715
7S9U|1|A|U|1716
7S9U|1|A|C|1717
7S9U|1|A|G|1718
7S9U|1|A|G|1719
*
7S9U|1|A|C|2019
7S9U|1|A|U|2020
7S9U|1|A|G|2021
7S9U|1|A|U|2022
7S9U|1|A|C|2023

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain K

50S ribosomal protein L14