IL_7SA4_040

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

7SA4|1|1|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_040 not in the Motif Atlas

Geometric match to IL_5D8H_002

Geometric discrepancy: 0.252

The information below is about IL_5D8H_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

7SA4|1|1|G|1059
7SA4|1|1|U|1060
7SA4|1|1|U|1061
7SA4|1|1|G|1062
*
7SA4|1|1|C|1076
7SA4|1|1|A|1077
7SA4|1|1|U|1078
7SA4|1|1|C|1079

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11