IL_7SA4_101

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_101 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0784

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SA4|1|1|C|2652
7SA4|1|1|U|2653
7SA4|1|1|A|2654
7SA4|1|1|G|2655
7SA4|1|1|U|2656
7SA4|1|1|A|2657
7SA4|1|1|C|2658
*
7SA4|1|1|G|2663
7SA4|1|1|G|2664
7SA4|1|1|A|2665
7SA4|1|1|C|2666
7SA4|1|1|C|2667
7SA4|1|1|G|2668

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6