IL_7SA4_121

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SA4|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_121 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1115

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7SA4|1|2|G|147
7SA4|1|2|G|148
7SA4|1|2|A|149
7SA4|1|2|U|150
7SA4|1|2|A|151
7SA4|1|2|A|152
7SA4|1|2|C|153
*
7SA4|1|2|G|168
7SA4|1|2|C|169
7SA4|1|2|U|170
7SA4|1|2|A|171
7SA4|1|2|A|172
7SA4|1|2|U|173
7SA4|1|2|A|174
7SA4|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20