IL_7SA4_122

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7SA4|1|2|U|244, 7SA4|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_122 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0774

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7SA4|1|2|G|242
7SA4|1|2|A|243
7SA4|1|2|U|244
7SA4|1|2|U|245
7SA4|1|2|A|246
7SA4|1|2|G|247
*
7SA4|1|2|C|277
7SA4|1|2|G|278
7SA4|1|2|A|279
7SA4|1|2|C|280
7SA4|1|2|G|281
7SA4|1|2|A|282
7SA4|1|2|U|283
7SA4|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17