IL_7SA4_131

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_131 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.133

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7SA4|1|2|G|450
7SA4|1|2|A|451
7SA4|1|2|A|452
7SA4|1|2|G|453
7SA4|1|2|G|454
7SA4|1|2|G|455
*
7SA4|1|2|C|477
7SA4|1|2|A|478
7SA4|1|2|U|479
7SA4|1|2|U|480
7SA4|1|2|G|481
7SA4|1|2|A|482
7SA4|1|2|C|483

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16