IL_7SA4_179
3D structure
- PDB id
- 7SA4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SA4_179 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0656
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7SA4|1|4|C|71
7SA4|1|4|G|72
7SA4|1|4|A|73
7SA4|1|4|U|74
7SA4|1|4|G|75
7SA4|1|4|G|76
7SA4|1|4|U|77
7SA4|1|4|A|78
7SA4|1|4|G|79
*
7SA4|1|4|C|97
7SA4|1|4|G|98
7SA4|1|4|A|99
7SA4|1|4|G|100
7SA4|1|4|A|101
7SA4|1|4|G|102
7SA4|1|4|U|103
7SA4|1|4|A|104
7SA4|1|4|G|105
Current chains
- Chain 4
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain Z
- 50S ribosomal protein L30
Coloring options: