IL_7SAE_009

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GGAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SAE_009 not in the Motif Atlas

Homologous match to IL_4WF9_012

Geometric discrepancy: 0.3637

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_46387.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7SAE|1|A|G|304
7SAE|1|A|A|305
7SAE|1|A|C|306
*
7SAE|1|A|G|410
7SAE|1|A|G|411
7SAE|1|A|A|412
7SAE|1|A|U|413
7SAE|1|A|C|414

Current chains

Chain A

RNA (2434-MER)

Nearby chains