IL_7SAE_036

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SAE_036 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.1112

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

7SAE|1|A|U|1050
7SAE|1|A|C|1051
7SAE|1|A|C|1052
7SAE|1|A|C|1053
7SAE|1|A|A|1054
7SAE|1|A|A|1055
7SAE|1|A|A|1056
7SAE|1|A|G|1057
*
7SAE|1|A|C|1196
7SAE|1|A|A|1197

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20