IL_7SAE_039

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAAG*CGAAAAUGUACCGGGGC

Length

24 nucleotides

Bulged bases

7SAE|1|A|A|1173, 7SAE|1|A|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SAE_039 not in the Motif Atlas

Geometric match to IL_4WF9_040

Geometric discrepancy: 0.2165

The information below is about IL_4WF9_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

7SAE|1|A|G|1070
7SAE|1|A|G|1071
7SAE|1|A|A|1072
7SAE|1|A|A|1073
7SAE|1|A|A|1074
7SAE|1|A|A|1075
7SAE|1|A|G|1076
*
7SAE|1|A|C|1170
7SAE|1|A|G|1171
7SAE|1|A|A|1172
7SAE|1|A|A|1173
7SAE|1|A|A|1174
7SAE|1|A|A|1175
7SAE|1|A|U|1176
7SAE|1|A|G|1177
7SAE|1|A|U|1178
7SAE|1|A|A|1179
7SAE|1|A|C|1180
7SAE|1|A|C|1181
7SAE|1|A|G|1182
7SAE|1|A|G|1183
7SAE|1|A|G|1184
7SAE|1|A|G|1185
7SAE|1|A|C|1186

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain J

50S ribosomal protein L13