IL_7SAE_042

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGGG*CGCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SAE_042 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2903

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7SAE|1|A|A|1243
7SAE|1|A|A|1244
7SAE|1|A|G|1245
7SAE|1|A|G|1246
7SAE|1|A|G|1247
*
7SAE|1|A|C|1279
7SAE|1|A|G|1280
7SAE|1|A|C|1281
7SAE|1|A|U|1282
7SAE|1|A|U|1283

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15