IL_7SFR_018

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUC*GAGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SFR_018 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3292

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_91940.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7SFR|1|A|U|635
7SFR|1|A|U|636
7SFR|1|A|C|637
*
7SFR|1|A|G|645
7SFR|1|A|A|646
7SFR|1|A|G|647
7SFR|1|A|G|648

Current chains

Chain A

23S rRNA

Nearby chains