IL_7SFR_105

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SFR_105 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1292

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SFR|1|A|C|2890
7SFR|1|A|U|2891
7SFR|1|A|A|2892
7SFR|1|A|G|2893
7SFR|1|A|U|2894
7SFR|1|A|A|2895
7SFR|1|A|C|2896
*
7SFR|1|A|G|2901
7SFR|1|A|G|2902
7SFR|1|A|A|2903
7SFR|1|A|C|2904
7SFR|1|A|C|2905
7SFR|1|A|G|2906

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6