IL_7SFR_159

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

7SFR|1|a|C|927

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SFR_159 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.2343

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_03866.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7SFR|1|a|G|926
7SFR|1|a|C|927
7SFR|1|a|A|928
*
7SFR|1|a|U|1373
7SFR|1|a|U|1374
7SFR|1|a|C|1375
7SFR|1|a|C|1376
7SFR|1|a|C|1377

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9