IL_7SFR_174

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCUG*CGAAUC

Length

10 nucleotides

Bulged bases

7SFR|1|a|U|1249, 7SFR|1|a|A|1272

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SFR_174 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2544

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7SFR|1|a|G|1247
7SFR|1|a|C|1248
7SFR|1|a|U|1249
7SFR|1|a|G|1250
*
7SFR|1|a|C|1269
7SFR|1|a|G|1270
7SFR|1|a|A|1271
7SFR|1|a|A|1272
7SFR|1|a|U|1273
7SFR|1|a|C|1274

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z