IL_7SS9_027
3D structure
- PDB id
- 7SS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late translocation intermediate with EF-G partially dissociated (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCACUG*CAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SS9_027 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.3838
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06691.1
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7SS9|1|1|G|864
7SS9|1|1|C|865
7SS9|1|1|A|866
7SS9|1|1|C|867
7SS9|1|1|U|868
7SS9|1|1|G|869
*
7SS9|1|1|C|908
7SS9|1|1|A|909
7SS9|1|1|A|910
7SS9|1|1|A|911
7SS9|1|1|C|912
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain m
- 50S ribosomal protein L16
- Chain w
- 50S ribosomal protein L27
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