IL_7SS9_040

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

7SS9|1|1|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_040 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.5776

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

7SS9|1|1|G|1059
7SS9|1|1|U|1060
7SS9|1|1|U|1061
7SS9|1|1|G|1062
*
7SS9|1|1|C|1076
7SS9|1|1|A|1077
7SS9|1|1|U|1078
7SS9|1|1|C|1079

Current chains

Chain 1

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L11

Chain m

50S ribosomal protein L16