IL_7SS9_065

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7SS9|1|1|A|1801, 7SS9|1|1|C|1816, 7SS9|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_065 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.1427

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7SS9|1|1|U|1798
7SS9|1|1|G|1799
7SS9|1|1|C|1800
7SS9|1|1|A|1801
7SS9|1|1|A|1802
7SS9|1|1|A|1803
7SS9|1|1|C|1804
*
7SS9|1|1|G|1813
7SS9|1|1|G|1814
7SS9|1|1|A|1815
7SS9|1|1|C|1816
7SS9|1|1|G|1817
7SS9|1|1|U|1818
7SS9|1|1|A|1819
7SS9|1|1|U|1820
7SS9|1|1|A|1821

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2