IL_7SS9_078

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCU*AUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_078 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2892

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7SS9|1|1|G|2102
7SS9|1|1|C|2103
7SS9|1|1|C|2104
7SS9|1|1|U|2105
*
7SS9|1|1|A|2184
7SS9|1|1|U|2185
7SS9|1|1|G|2186
7SS9|1|1|U|2187

Current chains

Chain 1

23S rRNA

Nearby chains

Chain a

50S ribosomal protein L1