3D structure

PDB id
7SS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Late translocation intermediate with EF-G partially dissociated (Structure V)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SS9_093 not in the Motif Atlas
Homologous match to IL_5J7L_346
Geometric discrepancy: 0.2539
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

7SS9|1|1|C|2652
7SS9|1|1|U|2653
7SS9|1|1|A|2654
7SS9|1|1|G|2655
7SS9|1|1|U|2656
7SS9|1|1|A|2657
7SS9|1|1|C|2658
*
7SS9|1|1|G|2663
7SS9|1|1|G|2664
7SS9|1|1|A|2665
7SS9|1|1|C|2666
7SS9|1|1|C|2667
7SS9|1|1|G|2668

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 8
Elongation factor G
Chain f
50S ribosomal protein L6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0704 s