IL_7SS9_110

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCGAA*UGG

Length

8 nucleotides

Bulged bases

7SS9|1|3|G|64, 7SS9|1|3|A|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_110 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.398

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7SS9|1|3|U|62
7SS9|1|3|C|63
7SS9|1|3|G|64
7SS9|1|3|A|65
7SS9|1|3|A|66
*
7SS9|1|3|U|103
7SS9|1|3|G|104
7SS9|1|3|G|105

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20