IL_7SS9_134

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_134 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3638

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

7SS9|1|3|G|597
7SS9|1|3|U|598
7SS9|1|3|C|599
*
7SS9|1|3|G|639
7SS9|1|3|A|640
7SS9|1|3|U|641
7SS9|1|3|A|642
7SS9|1|3|C|643

Current chains

Chain 3

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S8

Chain V

30S ribosomal protein S17