IL_7SS9_136

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_136 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.1266

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

7SS9|1|3|G|654
7SS9|1|3|A|655
*
7SS9|1|3|U|751
7SS9|1|3|G|752
7SS9|1|3|A|753
7SS9|1|3|C|754

Current chains

Chain 3

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S8

Chain T

30S ribosomal protein S15