IL_7SS9_145

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAC*GUUCCC

Length

10 nucleotides

Bulged bases

7SS9|1|3|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_145 not in the Motif Atlas

Homologous match to IL_6CZR_149

Geometric discrepancy: 0.4987

The information below is about IL_6CZR_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93211.1

Basepair signature

cWW-cWS-cWW-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

7SS9|1|3|G|933
7SS9|1|3|C|934
7SS9|1|3|A|935
7SS9|1|3|C|936
*
7SS9|1|3|G|1379
7SS9|1|3|U|1380
7SS9|1|3|U|1381
7SS9|1|3|C|1382
7SS9|1|3|C|1383
7SS9|1|3|C|1384

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain L

30S ribosomal protein S7

Chain N

30S ribosomal protein S9