IL_7SS9_194

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGA*UAAU

Length

9 nucleotides

Bulged bases

7SS9|1|3|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_194 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2506

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7SS9|1|3|A|28
7SS9|1|3|U|29
7SS9|1|3|U|30
7SS9|1|3|G|31
7SS9|1|3|A|32
*
7SS9|1|3|U|552
7SS9|1|3|A|553
7SS9|1|3|A|554
7SS9|1|3|U|555

Current chains

Chain 3

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain Q

30S ribosomal protein S12