IL_7SS9_220

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

7SS9|1|1|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_220 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.2469

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7SS9|1|1|C|1437
7SS9|1|1|U|1438
7SS9|1|1|A|1439
7SS9|1|1|U|1440
*
7SS9|1|1|A|1551
7SS9|1|1|A|1552
7SS9|1|1|A|1553
7SS9|1|1|U|1554
7SS9|1|1|G|1555

Current chains

Chain 1

23S rRNA

Nearby chains