3D structure

PDB id
7SS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Late translocation intermediate with EF-G partially dissociated (Structure V)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUAU*AAAUG
Length
9 nucleotides
Bulged bases
7SS9|1|1|U|1554
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SS9_220 not in the Motif Atlas
Homologous match to IL_7A0S_053
Geometric discrepancy: 0.2469
The information below is about IL_7A0S_053
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_99646.2
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7SS9|1|1|C|1437
7SS9|1|1|U|1438
7SS9|1|1|A|1439
7SS9|1|1|U|1440
*
7SS9|1|1|A|1551
7SS9|1|1|A|1552
7SS9|1|1|A|1553
7SS9|1|1|U|1554
7SS9|1|1|G|1555

Current chains

Chain 1
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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