IL_7SSD_106

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_106 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.112

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

7SSD|1|1|U|2847
7SSD|1|1|G|2848
7SSD|1|1|U|2849
7SSD|1|1|A|2850
7SSD|1|1|A|2851
7SSD|1|1|G|2852
*
7SSD|1|1|U|2865
7SSD|1|1|U|2866
7SSD|1|1|G|2867
7SSD|1|1|A|2868
7SSD|1|1|G|2869

Current chains

Chain 1

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19