IL_7SSD_116

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAC*GUG

Length

8 nucleotides

Bulged bases

7SSD|1|3|A|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_116 not in the Motif Atlas

Geometric match to IL_5M0H_002

Geometric discrepancy: 0.2689

The information below is about IL_5M0H_002

Detailed Annotation

Multiple bulged bases, near cWW

Broad Annotation

Multiple bulged bases, near cWW

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

7SSD|1|3|C|63
7SSD|1|3|G|64
7SSD|1|3|A|65
7SSD|1|3|A|66
7SSD|1|3|C|67
*
7SSD|1|3|G|102
7SSD|1|3|U|103
7SSD|1|3|G|104

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20