3D structure

PDB id
7SSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid translocation intermediate with EF-G bound with GDP (Structure IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
7SSD|1|3|A|532, 7SSD|1|3|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SSD_133 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.4661
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7SSD|1|3|G|515
7SSD|1|3|U|516
7SSD|1|3|G|517
7SSD|1|3|C|518
7SSD|1|3|C|519
7SSD|1|3|A|520
7SSD|1|3|G|521
*
7SSD|1|3|C|528
7SSD|1|3|G|529
7SSD|1|3|G|530
7SSD|1|3|U|531
7SSD|1|3|A|532
7SSD|1|3|A|533
7SSD|1|3|U|534
7SSD|1|3|A|535
7SSD|1|3|C|536

Current chains

Chain 3
16S rRNA

Nearby chains

Chain 4
mRNA
Chain 8
Elongation factor G
Chain H
30S ribosomal protein S3
Chain I
30S ribosomal protein S4
Chain Q
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3229 s