3D structure

PDB id
7SSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid translocation intermediate with EF-G bound with GDP (Structure IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GG*CAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SSD_150 not in the Motif Atlas
Homologous match to IL_4LFB_038
Geometric discrepancy: 0.3759
The information below is about IL_4LFB_038
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

7SSD|1|3|G|953
7SSD|1|3|G|954
*
7SSD|1|3|C|1226
7SSD|1|3|A|1227
7SSD|1|3|C|1228

Current chains

Chain 3
16S rRNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain 6
Transfer RNA; tRNA
Chain R
30S ribosomal protein S13
Chain X
30S ribosomal protein S19

Coloring options:


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