IL_7SSD_181
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SSD_181 not in the Motif Atlas
- Homologous match to IL_7A0S_109
- Geometric discrepancy: 0.0885
- The information below is about IL_7A0S_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
7SSD|1|1|G|1666
7SSD|1|1|G|1667
7SSD|1|1|A|1668
7SSD|1|1|A|1669
7SSD|1|1|C|1670
7SSD|1|1|U|1671
7SSD|1|1|A|1672
7SSD|1|1|G|1673
7SSD|1|1|G|1674
*
7SSD|1|1|C|1990
7SSD|1|1|U|1991
7SSD|1|1|G|1992
7SSD|1|1|U|1993
7SSD|1|1|C|1994
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
Coloring options: