IL_7SSL_077

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

7SSL|1|1|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_077 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.2054

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7SSL|1|1|A|2070
7SSL|1|1|A|2071
*
7SSL|1|1|U|2438
7SSL|1|1|A|2439
7SSL|1|1|C|2440
7SSL|1|1|U|2441

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain b

50S ribosomal protein L2