IL_7SSL_097

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

7SSL|1|1|U|2689, 7SSL|1|1|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_097 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.1498

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

7SSL|1|1|U|2687
7SSL|1|1|G|2688
7SSL|1|1|U|2689
7SSL|1|1|U|2690
7SSL|1|1|C|2691
*
7SSL|1|1|G|2718
7SSL|1|1|G|2719
7SSL|1|1|U|2720
7SSL|1|1|A|2721
7SSL|1|1|G|2722

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19