IL_7SSL_164

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGACC*GCAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_164 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3539

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7SSL|1|3|G|1258
7SSL|1|3|C|1259
7SSL|1|3|G|1260
7SSL|1|3|A|1261
7SSL|1|3|C|1262
7SSL|1|3|C|1263
*
7SSL|1|3|G|1272
7SSL|1|3|C|1273
7SSL|1|3|A|1274
7SSL|1|3|A|1275
7SSL|1|3|G|1276
7SSL|1|3|C|1277

Current chains

Chain 3

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S3

Chain S

30S ribosomal protein S14

Chain X

30S ribosomal protein S19