IL_7SSL_175

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGC*GACUU

Length

9 nucleotides

Bulged bases

7SSL|1|1|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_175 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.2465

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

7SSL|1|1|G|695
7SSL|1|1|G|696
7SSL|1|1|G|697
7SSL|1|1|C|698
*
7SSL|1|1|G|763
7SSL|1|1|A|764
7SSL|1|1|C|765
7SSL|1|1|U|766
7SSL|1|1|U|767

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2