IL_7SSL_176

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUU*GGAC

Length

7 nucleotides

Bulged bases

7SSL|1|1|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_176 not in the Motif Atlas

Geometric match to IL_7ECN_001

Geometric discrepancy: 0.1997

The information below is about IL_7ECN_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7SSL|1|1|G|701
7SSL|1|1|U|702
7SSL|1|1|U|703
*
7SSL|1|1|G|728
7SSL|1|1|G|729
7SSL|1|1|A|730
7SSL|1|1|C|731

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2