IL_7SSL_177
3D structure
- PDB id
- 7SSL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAAGG*CUGGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SSL_177 not in the Motif Atlas
- Homologous match to IL_7A0S_018
- Geometric discrepancy: 0.1793
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_06136.2
- Basepair signature
- cWW-tHS-cWW-tHS-tSH-tSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
7SSL|1|1|U|703
7SSL|1|1|G|704
7SSL|1|1|A|705
7SSL|1|1|A|706
7SSL|1|1|G|707
7SSL|1|1|G|708
*
7SSL|1|1|C|723
7SSL|1|1|U|724
7SSL|1|1|G|725
7SSL|1|1|G|726
7SSL|1|1|A|727
7SSL|1|1|G|728
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain b
- 50S ribosomal protein L2
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