IL_7SSL_188

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7SSL|1|1|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_188 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.2009

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7SSL|1|1|U|2081
7SSL|1|1|A|2082
7SSL|1|1|G|2083
*
7SSL|1|1|U|2236
7SSL|1|1|G|2237
7SSL|1|1|G|2238
7SSL|1|1|G|2239

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain b

50S ribosomal protein L2

Chain x

50S ribosomal protein L28