IL_7SSN_040

3D structure

PDB id

7SSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

7SSN|1|1|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSN_040 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2963

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7SSN|1|1|C|1196
7SSN|1|1|G|1197
7SSN|1|1|U|1198
7SSN|1|1|U|1199
*
7SSN|1|1|A|1246
7SSN|1|1|A|1247
7SSN|1|1|G|1248
7SSN|1|1|U|1249
7SSN|1|1|G|1250

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15

Chain q

50S ribosomal protein L20