IL_7SSO_097

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

7SSO|1|1|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSO_097 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.1152

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

7SSO|1|1|U|2680
7SSO|1|1|C|2681
7SSO|1|1|A|2682
7SSO|1|1|C|2683
7SSO|1|1|U|2684
*
7SSO|1|1|A|2725
7SSO|1|1|A|2726
7SSO|1|1|A|2727

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19