IL_7SSW_174

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGC*GACUU

Length

9 nucleotides

Bulged bases

7SSW|1|1|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSW_174 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2534

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7SSW|1|1|G|695
7SSW|1|1|G|696
7SSW|1|1|G|697
7SSW|1|1|C|698
*
7SSW|1|1|G|763
7SSW|1|1|A|764
7SSW|1|1|C|765
7SSW|1|1|U|766
7SSW|1|1|U|767

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2