IL_7SSW_177

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGGU*ACUUAC

Length

11 nucleotides

Bulged bases

7SSW|1|1|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSW_177 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3992

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7SSW|1|1|G|880
7SSW|1|1|G|881
7SSW|1|1|G|882
7SSW|1|1|G|883
7SSW|1|1|U|884
*
7SSW|1|1|A|892
7SSW|1|1|C|893
7SSW|1|1|U|894
7SSW|1|1|U|895
7SSW|1|1|A|896
7SSW|1|1|C|897

Current chains

Chain 1

23S rRNA

Nearby chains