IL_7ST2_098

3D structure

PDB id

7ST2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST2_098 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0596

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7ST2|1|1|C|2652
7ST2|1|1|U|2653
7ST2|1|1|A|2654
7ST2|1|1|G|2655
7ST2|1|1|U|2656
7ST2|1|1|A|2657
7ST2|1|1|C|2658
*
7ST2|1|1|G|2663
7ST2|1|1|G|2664
7ST2|1|1|A|2665
7ST2|1|1|C|2666
7ST2|1|1|C|2667
7ST2|1|1|G|2668

Current chains

Chain 1

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L6