IL_7ST6_046

3D structure

PDB id

7ST6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation, non-rotated 70S ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

7ST6|1|1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST6_046 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.1547

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

7ST6|1|1|C|1319
7ST6|1|1|C|1320
7ST6|1|1|A|1321
7ST6|1|1|A|1322
7ST6|1|1|C|1323
*
7ST6|1|1|G|1331
7ST6|1|1|G|1332
7ST6|1|1|G|1333

Current chains

Chain 1

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L22

Chain t

50S ribosomal protein L23