IL_7ST6_179

3D structure

PDB id

7ST6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation, non-rotated 70S ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUU*AUGCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST6_179 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.375

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7ST6|1|1|U|868
7ST6|1|1|G|869
7ST6|1|1|U|870
7ST6|1|1|U|871
7ST6|1|1|U|872
*
7ST6|1|1|A|905
7ST6|1|1|U|906
7ST6|1|1|G|907
7ST6|1|1|C|908
7ST6|1|1|A|909

Current chains

Chain 1

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16